STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pucLUrate oxidase. (358 aa)    
Predicted Functional Partners:
VP01_2301g5
TauD domain-containing protein.
   
  
 0.902
VP01_588g10
Allantoinase.
 
 
 0.854
VP01_588g6
Amidohydro-rel domain-containing protein.
 
 
 0.832
VP01_1268g1
Uncharacterized protein.
   
 
 0.747
VP01_2435g3
Uncharacterized protein.
  
  
 0.649
VP01_2435g1
Uncharacterized protein.
  
  
 0.649
VP01_2189g6
Aminotran_5 domain-containing protein.
  
  
 0.643
VP01_3514g1
Amidohydro-rel domain-containing protein.
  
  
 0.588
VP01_1259g2
Kynurenine 3-monooxygenase.
   
 
  0.583
VP01_1572g4
A_deaminase domain-containing protein.
     
 0.538
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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