STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_2089g1Uncharacterized protein. (709 aa)    
Predicted Functional Partners:
VP01_969g7
Uncharacterized protein.
    
   0.632
rpsB-2
Ribosomal protein S2.
    
   0.621
VP01_2562g3
Uncharacterized protein.
    
 
 0.618
VP01_2935g2
Ribosomal_L5_C domain-containing protein.
    
 
 0.617
VP01_3700g1
S4 RNA-binding domain-containing protein.
    
 
 0.616
rpsR
Ribosomal protein S18; Belongs to the bacterial ribosomal protein bS18 family.
   
 
 0.616
rplN
Ribosomal protein L14; Belongs to the universal ribosomal protein uL14 family.
    
 
 0.616
rplO
Ribosomal protein L15.
   
   0.615
VP01_2109g2
Sod_Fe_C domain-containing protein.
   
   0.614
rpmJ
Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.
    
   0.613
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.