STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_2004g2Uncharacterized protein. (508 aa)    
Predicted Functional Partners:
VP01_1694g5
MINDY_DUB domain-containing protein.
    
 0.767
VP01_102g8
VOC domain-containing protein.
     
 0.706
VP01_863g3
Uracil phosphoribosyltransferase.
     
 0.637
VP01_622g3
Uncharacterized protein.
     
 0.637
VP01_1518g5
Succinyl-CoA synthetase beta subunit.
   
 0.627
VP01_3042g5
Uncharacterized protein.
   
 
  0.601
VP01_319g8
Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.
   
 
 0.574
VP01_3099g4
Uncharacterized protein.
    
 
 0.554
VP01_651g5
Histone-lysine N-methyltransferase SETD1.
     
 0.548
VP01_1095g4
Uncharacterized protein.
   
 0.546
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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