STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_2108g2Ubiquitin-conjugating enzyme E2 W. (292 aa)    
Predicted Functional Partners:
VP01_2438g4
Ubiquitin-conjugating enzyme E2.
    
 0.945
VP01_2311g1
HECT domain-containing protein.
    
 0.924
VP01_1528g6
Uncharacterized protein.
    
 0.924
VP01_1636g2
Ubiquitin-activating enzyme E1; Belongs to the ubiquitin-activating E1 family.
   
 0.923
VP01_3134g3
Large subunit ribosomal protein L40e.
   
 0.908
VP01_182g4
Uncharacterized protein.
   
 0.908
VP01_741g4
RING-type domain-containing protein.
    
 0.889
VP01_609g10
Uncharacterized protein.
    
 0.888
VP01_282g7
E2_bind domain-containing protein.
   
 0.879
VP01_281g8
E1-like protein-activating enzyme G.
   
 0.879
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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