STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_1945g5Uncharacterized protein. (314 aa)    
Predicted Functional Partners:
VP01_846g1
RRM domain-containing protein.
   
 
 0.990
VP01_503g3
Brix domain-containing protein.
   
 
 0.981
VP01_292g10
Uncharacterized protein.
   
 
 0.975
VP01_1072g3
Brix domain-containing protein.
   
 
 0.975
VP01_2342g2
Brix domain-containing protein.
   
 
 0.974
VP01_1212g4
Uncharacterized protein.
   
 
 0.973
VP01_1430g1
Protein MAK16; Belongs to the MAK16 family.
   
   0.966
VP01_496g7
Large subunit ribosomal protein L24e.
   
 
 0.964
VP01_2250g2
Brix domain-containing protein.
   
 
 0.964
VP01_398g2
Uncharacterized protein.
   
 
 0.958
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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