STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EH55_12565C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (424 aa)    
Predicted Functional Partners:
EH55_12560
DctP family TRAP transporter solute receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.939
EH55_00665
C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.858
EH55_05090
C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.845
EH55_04570
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.787
EH55_13425
C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.779
EH55_08330
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.775
EH55_00870
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.771
EH55_13550
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.766
EH55_12555
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.738
EH55_12570
Ornithine cyclodeaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.686
Your Current Organism:
Synergistes jonesii
NCBI taxonomy Id: 2754
Other names: ATCC 49833, S. jonesii, strain 78-1
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.