STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cdca5Cell division cycle associated 5. (285 aa)    
Predicted Functional Partners:
smc3
Structural maintenance of chromosomes 3.
   
 0.962
espl1
Extra spindle pole bodies like 1, separase.
   
 
 0.926
smc1a
Structural maintenance of chromosomes 1A.
   
 0.914
ENSECRP00000013196
annotation not available
    
 0.896
cdca8
Cell division cycle associated 8.
   
  
 0.889
pds5b
PDS5 cohesin associated factor B.
    
 0.882
ENSECRP00000019751
annotation not available
    
 0.877
rad21
RAD21 cohesin complex component.
    
 0.877
nuf2
NUF2 component of NDC80 kinetochore complex.
   
  
 0.870
cdc45
Cell division cycle 45.
   
  
 0.864
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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