STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phbProhibitin. (272 aa)    
Predicted Functional Partners:
phb2
Prohibitin 2.
  
0.999
spg7
SPG7 matrix AAA peptidase subunit, paraplegin.
  
 0.943
afg3l2
AFG3 like matrix AAA peptidase subunit 2.
  
 0.935
LOC114657893
AFG3-like protein 1.
  
 0.935
yme1l1
YME1 like 1 ATPase.
  
 0.894
c1qbp
Complement C1q binding protein.
   
 0.889
stoml2
Stomatin like 2.
   
 
 0.881
pmpca
Peptidase, mitochondrial processing alpha subunit.
  
 0.870
LOC114655929
Mitochondrial chaperone BCS1.
  
 0.795
braf
B-Raf proto-oncogene, serine/threonine kinase.
   
 0.788
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.