STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114661548Excitatory amino acid transporter 5-like. (517 aa)    
Predicted Functional Partners:
slc1a1
Solute carrier family 1 member 1.
  
  
0.700
slc1a2
Solute carrier family 1 member 2.
  
 
 
0.666
LOC114661354
Excitatory amino acid transporter 2-like.
  
 
 
0.662
slc1a3
Solute carrier family 1 member 3.
  
  
 
0.611
LOC114662851
Excitatory amino acid transporter 1-like.
  
  
 
0.611
slc6a3
Solute carrier family 6 member 3.
    
 0.587
slc6a2
Solute carrier family 6 member 2.
    
 0.587
slc6a4
Solute carrier family 6 member 4.
    
 0.551
LOC114669054
Sodium-dependent serotonin transporter-like.
    
 0.551
aldh7a1
Aldehyde dehydrogenase 7 family member A1.
  
 
 0.546
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.