STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114665906Thrombomodulin-like. (527 aa)    
Predicted Functional Partners:
f2
Coagulation factor II, thrombin.
    
 0.963
ENSECRP00000012091
annotation not available
    
 0.847
LOC114647755
Mannose-binding protein C-like.
    
 0.772
plat
Plasminogen activator, tissue type.
   
 0.718
plau
Plasminogen activator, urokinase.
   
 0.718
arid4a
AT-rich interaction domain 4A.
    
 0.714
arid4b
AT-rich interaction domain 4B.
    
 0.714
ENSECRP00000011256
annotation not available
   
  0.699
mysm1
Myb like, SWIRM and MPN domains 1.
    
 0.664
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
  0.663
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.