STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114668910D-amino-acid oxidase-like. (340 aa)    
Predicted Functional Partners:
sardh
Sarcosine dehydrogenase.
  
 0.944
ENSECRP00000009267
annotation not available
  
 0.903
agxt
Alanine--glyoxylate and serine--pyruvate aminotransferase.
  
 
 0.900
dmgdh
Dimethylglycine dehydrogenase.
  
 0.891
agxt2
Alanine--glyoxylate aminotransferase 2.
  
 
 0.884
amt
Aminomethyltransferase.
  
 0.875
l3hypdh
trans-L-3-hydroxyproline dehydratase.
    
 0.872
gldc
Glycine decarboxylase.
  
 
 0.862
hao2
Hydroxyacid oxidase 2.
  
 
 0.861
pyroxd1
Pyridine nucleotide-disulphide oxidoreductase domain 1.
   
 0.861
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.