STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114641608Oocyte zinc finger protein XlCOF6-like. (693 aa)    
Predicted Functional Partners:
ENSECRP00000011256
annotation not available
    
  0.603
ENSECRP00000000849
annotation not available
    
  0.527
ythdc2
YTH domain containing 2.
    
  0.443
spopl
Speckle type BTB/POZ protein like.
   
  0.443
gtf3c3
General transcription factor IIIC subunit 3.
    
  0.443
spop
Speckle type BTB/POZ protein.
   
  0.443
lamtor2
Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.
    
  0.442
mrps11
Mitochondrial ribosomal protein S11.
    
  0.438
LOC114656119
Thioredoxin domain-containing protein 3 homolog.
    
  0.435
mrps9
Mitochondrial ribosomal protein S9.
    
  0.434
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.