STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mthfsMethenyltetrahydrofolate synthetase. (213 aa)    
Predicted Functional Partners:
gart
annotation not available
   
 0.950
ftcd
Formimidoyltransferase cyclodeaminase.
    
 0.943
mthfd1
Methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1.
   
 0.933
mthfsd
Methenyltetrahydrofolate synthetase domain containing.
     
 0.924
mthfd1l
Methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like.
   
 0.922
mtfmt
Mitochondrial methionyl-tRNA formyltransferase.
  
 
 0.916
mthfd2
annotation not available
    
 0.901
LOC114642285
Bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial-like.
    
 0.901
atic
5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase.
    
 0.890
shmt2
Serine hydroxymethyltransferase 2.
  
 0.844
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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