STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trip4Thyroid hormone receptor interactor 4. (502 aa)    
Predicted Functional Partners:
ascc2
Activating signal cointegrator 1 complex subunit 2.
    
 0.998
ascc3
Activating signal cointegrator 1 complex subunit 3.
    
 0.997
snrnp200
Small nuclear ribonucleoprotein U5 subunit 200.
    
 0.969
med23
Mediator complex subunit 23.
    
   0.956
med11
Mediator complex subunit 11.
    
   0.956
med17
Mediator complex subunit 17.
    
   0.956
med4
Mediator complex subunit 4.
    
   0.956
med8
Mediator complex subunit 8.
    
   0.956
med25
Mediator complex subunit 25.
    
   0.956
polr2a
RNA polymerase II subunit A.
    
   0.956
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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