STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cacna1dCalcium voltage-gated channel subunit alpha1 D. (2161 aa)    
Predicted Functional Partners:
unc79
Unc-79 homolog, NALCN channel complex subunit.
   
 0.997
cacng1
Calcium voltage-gated channel auxiliary subunit gamma 1.
   
 0.956
cacna2d1
Calcium voltage-gated channel auxiliary subunit alpha2delta 1.
   
 0.898
cacna2d2
Calcium voltage-gated channel auxiliary subunit alpha2delta 2.
   
 0.898
cacnb2
Calcium voltage-gated channel auxiliary subunit beta 2.
   
 0.897
ENSECRP00000024873
annotation not available
   
 0.897
cacnb4
Calcium voltage-gated channel auxiliary subunit beta 4.
   
 0.897
cacna1i
Calcium voltage-gated channel subunit alpha1 I.
   
0.856
scn1b
Sodium voltage-gated channel beta subunit 1.
    
 0.854
cachd1
Cache domain containing 1.
   
 0.846
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.