STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
atpEATP synthase epsilon chain. (134 aa)    
Predicted Functional Partners:
atpI
ATP synthase CFO A chain subunit IV.
  
 0.994
R7QR29_CHOCR
Uncharacterized protein.
   
 0.994
atpA
ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.
  
 0.979
R7QMR3_CHOCR
ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.
  
 0.979
atpH
ATP synthase CFO C chain, lipid-binding subunit III; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
  
 0.976
atpB
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
 0.972
R7QQ45_CHOCR
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
 0.968
atpD
ATP synthase delta chain.
  
 0.964
R7QQS6_CHOCR
Uncharacterized protein.
  
 0.964
R7QV90_CHOCR
Uncharacterized protein; Belongs to the V-ATPase proteolipid subunit family.
  
 0.964
Your Current Organism:
Chondrus crispus
NCBI taxonomy Id: 2769
Other names: C. crispus, Irish moss, carageen, carrageen, carragheen
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