STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R7Q340_CHOCRKH_dom_type_1 domain-containing protein. (287 aa)    
Predicted Functional Partners:
R7QAH6_CHOCR
Exosome component 1 Csl1.
   
 0.998
R7QD87_CHOCR
Uncharacterized protein.
   
 0.998
R7QHJ3_CHOCR
KH_dom_type_1 domain-containing protein.
   
 0.998
R7QL29_CHOCR
Uncharacterized protein.
   
 0.998
R7QM41_CHOCR
Exosome component 9 Rrp45.
   
 0.998
R7Q866_CHOCR
Exosome component 5 Rrp46.
   
 0.997
R7Q3D8_CHOCR
Exosome component 10 Rrp6.
   
 0.996
R7Q4J1_CHOCR
HBS1 protein.
    
 0.981
R7Q2Z4_CHOCR
Superkiller viralicidic activity 2-like 2, putative.
   
 0.962
R7QEQ5_CHOCR
Uncharacterized protein.
   
 0.962
Your Current Organism:
Chondrus crispus
NCBI taxonomy Id: 2769
Other names: C. crispus, Irish moss, carageen, carrageen, carragheen
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.