R7Q4I6_CHOCR protein (Chondrus crispus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

R7Q4I6_CHOCR

Uncharacterized protein. (532 aa)

Predicted Functional Partners:

R7Q9V7_CHOCR

0.739

R7QLG9_CHOCR

0.714

R7QLY4_CHOCR

0.680

R7QJK7_CHOCR

0.662

S0F3N1_CHOCR

0.615

R7Q3E2_CHOCR

0.601

R7QF08_CHOCR

0.586

R7QQM9_CHOCR

0.528

R7QM16_CHOCR

0.514

S0F2R8_CHOCR

0.480

Your Current Organism:

Chondrus crispus

NCBI taxonomy Id: 2769
Other names: C. crispus, Irish moss, carageen, carrageen, carragheen

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R7Q3E2_CHOCR	R7Q4I6_CHOCR	R7Q3E2	R7Q4I6	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial.	Uncharacterized protein.	0.601
R7Q3E2_CHOCR	R7Q9V7_CHOCR	R7Q3E2	R7Q9V7	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial.	Uncharacterized protein.	0.999
R7Q3E2_CHOCR	R7QJK7_CHOCR	R7Q3E2	R7QJK7	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial.	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain.	0.999
R7Q3E2_CHOCR	R7QLG9_CHOCR	R7Q3E2	R7QLG9	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial.	Complex1_30kDa domain-containing protein; Belongs to the complex I 30 kDa subunit family.	0.999
R7Q3E2_CHOCR	R7QLY4_CHOCR	R7Q3E2	R7QLY4	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial.	NUOE homolog, NADH dehydrogenase (Ubiquinone) subunit.	0.999
R7Q3E2_CHOCR	S0F2R8_CHOCR	R7Q3E2	S0F2R8	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial.	NADH dehydrogenase subunit 7; Belongs to the complex I 49 kDa subunit family.	0.993
R7Q3E2_CHOCR	S0F3N1_CHOCR	R7Q3E2	S0F3N1	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial.	Putative NADH2 dehydrogenase (Ubiquinone) chain PSST; Belongs to the complex I 20 kDa subunit family.	0.999
R7Q4I6_CHOCR	R7Q3E2_CHOCR	R7Q4I6	R7Q3E2	Uncharacterized protein.	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial.	0.601
R7Q4I6_CHOCR	R7Q9V7_CHOCR	R7Q4I6	R7Q9V7	Uncharacterized protein.	Uncharacterized protein.	0.739
R7Q4I6_CHOCR	R7QF08_CHOCR	R7Q4I6	R7QF08	Uncharacterized protein.	Fe_hyd_lg_C domain-containing protein; Belongs to the NARF family.	0.586
R7Q4I6_CHOCR	R7QJK7_CHOCR	R7Q4I6	R7QJK7	Uncharacterized protein.	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain.	0.662
R7Q4I6_CHOCR	R7QLG9_CHOCR	R7Q4I6	R7QLG9	Uncharacterized protein.	Complex1_30kDa domain-containing protein; Belongs to the complex I 30 kDa subunit family.	0.714
R7Q4I6_CHOCR	R7QLY4_CHOCR	R7Q4I6	R7QLY4	Uncharacterized protein.	NUOE homolog, NADH dehydrogenase (Ubiquinone) subunit.	0.680
R7Q4I6_CHOCR	R7QM16_CHOCR	R7Q4I6	R7QM16	Uncharacterized protein.	Anamorsin.	0.514
R7Q4I6_CHOCR	R7QQM9_CHOCR	R7Q4I6	R7QQM9	Uncharacterized protein.	Mur_ligase_M domain-containing protein.	0.528
R7Q4I6_CHOCR	S0F2R8_CHOCR	R7Q4I6	S0F2R8	Uncharacterized protein.	NADH dehydrogenase subunit 7; Belongs to the complex I 49 kDa subunit family.	0.480
R7Q4I6_CHOCR	S0F3N1_CHOCR	R7Q4I6	S0F3N1	Uncharacterized protein.	Putative NADH2 dehydrogenase (Ubiquinone) chain PSST; Belongs to the complex I 20 kDa subunit family.	0.615
R7Q9V7_CHOCR	R7Q3E2_CHOCR	R7Q9V7	R7Q3E2	Uncharacterized protein.	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial.	0.999
R7Q9V7_CHOCR	R7Q4I6_CHOCR	R7Q9V7	R7Q4I6	Uncharacterized protein.	Uncharacterized protein.	0.739
R7Q9V7_CHOCR	R7QJK7_CHOCR	R7Q9V7	R7QJK7	Uncharacterized protein.	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain.	0.999