STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R7Q589_CHOCRZeta-carotene desaturase. (511 aa)    
Predicted Functional Partners:
R7QLM5_CHOCR
NnrU domain-containing protein.
  
  
 0.624
R7Q9T4_CHOCR
Uncharacterized protein.
  
  
 0.548
R7Q3V5_CHOCR
Uncharacterized protein.
   
 
 0.512
R7QAP0_CHOCR
Uncharacterized protein.
  
  
 0.488
R7QD25_CHOCR
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 0.488
R7QHU9_CHOCR
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 0.488
R7QKP1_CHOCR
Histone deacetylases (HDA1 superfamily).
   
 0.488
ycf53
Conserved hypothetical plastid protein.
  
 
   0.427
R7QCE6_CHOCR
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.425
S0F310_CHOCR
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.425
Your Current Organism:
Chondrus crispus
NCBI taxonomy Id: 2769
Other names: C. crispus, Irish moss, carageen, carrageen, carragheen
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.