R7Q9W4_CHOCR protein (Chondrus crispus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

R7Q9W4_CHOCR

DNA_pol_E_B domain-containing protein. (440 aa)

Predicted Functional Partners:

R7Q9D1_CHOCR

0.999

R7QS87_CHOCR

0.999

S0F318_CHOCR

0.998

R7QE00_CHOCR

0.962

R7QQQ5_CHOCR

0.957

R7QUI7_CHOCR

0.955

R7QC97_CHOCR

0.939

R7QAS8_CHOCR

0.917

R7Q9E5_CHOCR

0.916

R7QJQ5_CHOCR

0.914

Your Current Organism:

Chondrus crispus

NCBI taxonomy Id: 2769
Other names: C. crispus, Irish moss, carageen, carrageen, carragheen

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R7Q9D1_CHOCR	R7Q9E5_CHOCR	R7Q9D1	R7Q9E5	Uncharacterized protein.	Uncharacterized protein.	0.933
R7Q9D1_CHOCR	R7Q9W4_CHOCR	R7Q9D1	R7Q9W4	Uncharacterized protein.	DNA_pol_E_B domain-containing protein.	0.999
R7Q9D1_CHOCR	R7QAS8_CHOCR	R7Q9D1	R7QAS8	Uncharacterized protein.	DNA_pol_E_B domain-containing protein.	0.957
R7Q9D1_CHOCR	R7QC97_CHOCR	R7Q9D1	R7QC97	Uncharacterized protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.964
R7Q9D1_CHOCR	R7QE00_CHOCR	R7Q9D1	R7QE00	Uncharacterized protein.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.976
R7Q9D1_CHOCR	R7QJQ5_CHOCR	R7Q9D1	R7QJQ5	Uncharacterized protein.	AAA domain-containing protein.	0.889
R7Q9D1_CHOCR	R7QQQ5_CHOCR	R7Q9D1	R7QQQ5	Uncharacterized protein.	DNA polymerase.	0.957
R7Q9D1_CHOCR	R7QS87_CHOCR	R7Q9D1	R7QS87	Uncharacterized protein.	DNA polymerase.	0.999
R7Q9D1_CHOCR	R7QUI7_CHOCR	R7Q9D1	R7QUI7	Uncharacterized protein.	DNA helicase; Belongs to the MCM family.	0.898
R7Q9D1_CHOCR	S0F318_CHOCR	R7Q9D1	S0F318	Uncharacterized protein.	DNA primase; Belongs to the eukaryotic-type primase small subunit family.	0.999
R7Q9E5_CHOCR	R7Q9D1_CHOCR	R7Q9E5	R7Q9D1	Uncharacterized protein.	Uncharacterized protein.	0.933
R7Q9E5_CHOCR	R7Q9W4_CHOCR	R7Q9E5	R7Q9W4	Uncharacterized protein.	DNA_pol_E_B domain-containing protein.	0.916
R7Q9E5_CHOCR	R7QAS8_CHOCR	R7Q9E5	R7QAS8	Uncharacterized protein.	DNA_pol_E_B domain-containing protein.	0.887
R7Q9E5_CHOCR	R7QC97_CHOCR	R7Q9E5	R7QC97	Uncharacterized protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.998
R7Q9E5_CHOCR	R7QE00_CHOCR	R7Q9E5	R7QE00	Uncharacterized protein.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.877
R7Q9E5_CHOCR	R7QJQ5_CHOCR	R7Q9E5	R7QJQ5	Uncharacterized protein.	AAA domain-containing protein.	0.997
R7Q9E5_CHOCR	R7QQQ5_CHOCR	R7Q9E5	R7QQQ5	Uncharacterized protein.	DNA polymerase.	0.862
R7Q9E5_CHOCR	R7QS87_CHOCR	R7Q9E5	R7QS87	Uncharacterized protein.	DNA polymerase.	0.882
R7Q9E5_CHOCR	R7QUI7_CHOCR	R7Q9E5	R7QUI7	Uncharacterized protein.	DNA helicase; Belongs to the MCM family.	0.859
R7Q9E5_CHOCR	S0F318_CHOCR	R7Q9E5	S0F318	Uncharacterized protein.	DNA primase; Belongs to the eukaryotic-type primase small subunit family.	0.924