STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R7QA81_CHOCRUBIQUITIN_CONJUGAT_2 domain-containing protein. (757 aa)    
Predicted Functional Partners:
R7Q772_CHOCR
HECT domain-containing protein.
   
 0.858
R7QQT8_CHOCR
Ribosomal-ubiquitin fusion protein.
   
 0.763
R7Q9Z6_CHOCR
Ubiquitin-conjugating enzyme.
   
 0.749
R7QQ62_CHOCR
Ubiquitin-activating enzyme E1; Belongs to the ubiquitin-activating E1 family.
 
 0.745
R7QRM1_CHOCR
PI3K/PI4K domain-containing protein.
   
 0.684
R7Q3Y9_CHOCR
ThiF domain-containing protein.
   
 0.681
R7Q1I8_CHOCR
Ubiquitin-activating enzyme E1.
   
 0.667
R7QTP7_CHOCR
E3 ubiquitin ligase, putative.
    
 0.565
R7Q9M9_CHOCR
SP-RING-type domain-containing protein.
    
 0.557
R7Q8U2_CHOCR
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
   
 
 0.556
Your Current Organism:
Chondrus crispus
NCBI taxonomy Id: 2769
Other names: C. crispus, Irish moss, carageen, carrageen, carragheen
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.