STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R7QF23_CHOCRWD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family. (359 aa)    
Predicted Functional Partners:
R7QFG1_CHOCR
WD_REPEATS_REGION domain-containing protein.
    
 0.999
R7QKZ6_CHOCR
Protein transport protein Sec24-like.
   
 0.998
R7QA75_CHOCR
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 0.997
R7QKT3_CHOCR
Protein transport protein Sec24-like.
   
 0.996
R7QJ89_CHOCR
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
   
 0.995
R7QQG8_CHOCR
Sec16_C domain-containing protein.
    
 0.994
R7QKX8_CHOCR
Uncharacterized protein.
   
 0.990
R7QG45_CHOCR
Uncharacterized protein.
    
 0.987
R7QDN9_CHOCR
Small GTP-binding protein Sar1; Belongs to the small GTPase superfamily. SAR1 family.
   
 0.986
R7Q8J9_CHOCR
Nsp1_C domain-containing protein.
    
 0.982
Your Current Organism:
Chondrus crispus
NCBI taxonomy Id: 2769
Other names: C. crispus, Irish moss, carageen, carrageen, carragheen
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