STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R7QKJ1_CHOCRSphingolipid delta-4 desaturase. (334 aa)    
Predicted Functional Partners:
R7Q3B5_CHOCR
3-ketodihydrosphingosine reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 
 0.940
R7Q5K2_CHOCR
Sphingolipid delta-4 desaturase.
  
  
 
0.910
R7QAM2_CHOCR
Methionine aminopeptidase 2; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).
 
      0.872
R7QR28_CHOCR
Serine palmitoyltransferase, LCB2 subunit.
   
  
 0.547
R7QP85_CHOCR
Stearoyl-CoA desaturase Delta-9 fatty acid desaturase; Belongs to the cytochrome b5 family.
      
 0.534
R7QFB8_CHOCR
Ceramide synthase.
    
 0.455
R7QH13_CHOCR
Serine palmitoyltransferase, LCB1 subunit.
   
  
 0.409
Your Current Organism:
Chondrus crispus
NCBI taxonomy Id: 2769
Other names: C. crispus, Irish moss, carageen, carrageen, carragheen
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.