STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R7QN18_CHOCRTranslation initiation factor eIF5B. (1012 aa)    
Predicted Functional Partners:
R7QJQ7_CHOCR
KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.
   
 
 0.904
R7QJT8_CHOCR
Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.
   
 
 0.871
R7QK75_CHOCR
Ribosomal_L18_c domain-containing protein.
   
 
 0.848
R7QTX2_CHOCR
40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.
  
 0.846
R7QHG8_CHOCR
60S ribosomal protein L27A; Belongs to the universal ribosomal protein uL15 family.
   
 0.838
R7QNJ5_CHOCR
Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.
   
 
 0.836
R7Q8B4_CHOCR
Ribosomal_L2_C domain-containing protein.
   
 0.835
R7Q4P7_CHOCR
Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family.
   
 0.809
R7Q325_CHOCR
Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.
   
 0.807
R7Q3X0_CHOCR
Box H/ACA snoRNP rRNA pseudouridine syntase component dyskerin.
  
 
 0.805
Your Current Organism:
Chondrus crispus
NCBI taxonomy Id: 2769
Other names: C. crispus, Irish moss, carageen, carrageen, carragheen
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