STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R7QNF4_CHOCRDNA_MISMATCH_REPAIR_2 domain-containing protein. (295 aa)    
Predicted Functional Partners:
R7QSP3_CHOCR
DNA mismatch repair protein MutS homolog, MSH4.
  
0.967
R7QMJ8_CHOCR
MUTSd domain-containing protein.
 
     0.927
R7Q9P7_CHOCR
DNA mismatch repair protein MLH1.
 
 0.880
R7QNH0_CHOCR
Uncharacterized protein.
 
 0.841
R7QAX9_CHOCR
Uncharacterized protein.
 
 0.825
R7QGD9_CHOCR
DNA mismatch repair protein MutL.
  
 0.765
R7QC97_CHOCR
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
 0.713
R7Q9S7_CHOCR
Uncharacterized protein.
   
 0.656
R7QAT8_CHOCR
DNA repair protein complementing XPG, RAD2.
   
 0.521
FEN1
Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]
   
 0.521
Your Current Organism:
Chondrus crispus
NCBI taxonomy Id: 2769
Other names: C. crispus, Irish moss, carageen, carrageen, carragheen
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.