STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R7QQR9_CHOCRSpindle pole body component. (396 aa)    
Predicted Functional Partners:
R7QEI0_CHOCR
Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.
   
 0.995
R7Q7H6_CHOCR
Spindle pole body component.
   
 0.983
R7QH06_CHOCR
Uncharacterized protein.
    
 0.873
R7Q0A9_CHOCR
DAO domain-containing protein.
    
 
 0.645
R7Q1Q5_CHOCR
NDK domain-containing protein; Belongs to the NDK family.
    
  0.573
R7QBR9_CHOCR
Nucleoside-diphosphate kinase; Belongs to the NDK family.
    
  0.573
R7QFZ7_CHOCR
Nucleoside-diphosphate kinase; Belongs to the NDK family.
    
  0.573
rbcS
Ribulose bisphosphate carboxylase, small chain.
    
 0.560
R7Q1B3_CHOCR
PPR_long domain-containing protein.
    
 0.560
R7Q4L6_CHOCR
Uncharacterized protein.
    
 0.560
Your Current Organism:
Chondrus crispus
NCBI taxonomy Id: 2769
Other names: C. crispus, Irish moss, carageen, carrageen, carragheen
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