STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R7QT73_CHOCRSpoU_sub_bind domain-containing protein. (298 aa)    
Predicted Functional Partners:
R7QV70_CHOCR
Uncharacterized protein.
   
 
 0.969
rpl21
50S ribosomal protein L21.
   
   0.943
R7QME5_CHOCR
L51_S25_CI-B8 domain-containing protein.
    
   0.939
R7QRC1_CHOCR
Ribosomal_L18e/L15P domain-containing protein.
  
   0.911
R7Q9B2_CHOCR
EngB-type G domain-containing protein.
   
 
 0.882
R7QPW3_CHOCR
TRUD domain-containing protein.
   
   0.876
rpl13
50S ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.
  
 
 0.847
R7QK82_CHOCR
Uncharacterized protein.
  
 
 0.847
rpl3
50S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
   
 
 0.839
R7Q360_CHOCR
Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.
   
 
 0.839
Your Current Organism:
Chondrus crispus
NCBI taxonomy Id: 2769
Other names: C. crispus, Irish moss, carageen, carrageen, carragheen
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.