STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araAL-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose. (474 aa)    
Predicted Functional Partners:
PEPE_0164
L-ribulose 5-phosphate 4-epimerase.
 
  
 0.985
PEPE_0163
L-ribulokinase (putative).
 
  
 0.951
PEPE_0162
D-xylose proton-symporter; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
 
  
 0.802
PEPE_0157
Transcriptional regulator, GntR family.
 
   
 0.742
PEPE_0142
Fructose PTS system EIIBC or EIIC component; TC 4.A.2.1.8; TC 4.A.2.1.8; TC 4.A.2.1.8.
   
  
 0.628
PEPE_1164
Fructose PTS system EIIBC or EIIC component; TC 4.A.2.1.4; TC 4.A.2.1.4; TC 4.A.2.1.4.
   
  
 0.628
xylA
D-xylose isomerase; Belongs to the xylose isomerase family.
     
 0.549
alr
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
      
 0.508
PEPE_0166
L-alanine dehydrogenase.
       0.440
zwf
Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.
      
 0.437
Your Current Organism:
Pediococcus pentosaceus
NCBI taxonomy Id: 278197
Other names: P. pentosaceus ATCC 25745, Pediococcus pentosaceus ATCC 25745, Pediococcus pentosaceus str. ATCC 25745, Pediococcus pentosaceus strain ATCC 25745
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.