STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PEPE_0218Malate dehydrogenase (NAD); Belongs to the LDH/MDH superfamily. (306 aa)    
Predicted Functional Partners:
PEPE_1092
Pyruvate kinase; Belongs to the pyruvate kinase family.
  
 0.977
PEPE_0876
D-lactate dehydrogenase, LdhA; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
 0.968
PEPE_0246
Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.
  
 0.943
PEPE_1617
Malolactic enzyme.
  
 0.932
ldh
L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate.
  
  
0.925
PEPE_1772
Pyruvate dehydrogenase (E1) component, beta subunit.
  
 0.925
PEPE_0639
Pyruvate oxidase; Belongs to the TPP enzyme family.
  
 0.917
PEPE_1252
Pyruvate oxidase; Belongs to the TPP enzyme family.
  
 0.917
PEPE_1773
Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, alpha subunit.
  
 
 0.917
PEPE_1694
Hypothetical protein.
    
 0.914
Your Current Organism:
Pediococcus pentosaceus
NCBI taxonomy Id: 278197
Other names: P. pentosaceus ATCC 25745, Pediococcus pentosaceus ATCC 25745, Pediococcus pentosaceus str. ATCC 25745, Pediococcus pentosaceus strain ATCC 25745
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.