Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
PEPE_0937 | PEPE_1641 | PEPE_0937 | PEPE_1641 | Glycine/D-amino acid oxidase (deaminating). | Uncharacterized NAD(FAD)-dependent dehydrogenase. | 0.633 |
PEPE_0937 | atpA | PEPE_0937 | PEPE_1319 | Glycine/D-amino acid oxidase (deaminating). | ATP synthase F1 subcomplex alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. | 0.404 |
PEPE_1614 | PEPE_1641 | PEPE_1614 | PEPE_1641 | Phospholipid-binding protein. | Uncharacterized NAD(FAD)-dependent dehydrogenase. | 0.488 |
PEPE_1614 | rpmB | PEPE_1614 | PEPE_0836 | Phospholipid-binding protein. | LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family. | 0.782 |
PEPE_1614 | rpmJ | PEPE_1614 | PEPE_1395 | Phospholipid-binding protein. | LSU ribosomal protein L36P; Belongs to the bacterial ribosomal protein bL36 family. | 0.918 |
PEPE_1614 | rpsE | PEPE_1614 | PEPE_1401 | Phospholipid-binding protein. | SSU ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family. | 0.905 |
PEPE_1614 | rpsP | PEPE_1614 | PEPE_0847 | Phospholipid-binding protein. | SSU ribosomal protein S16P; Belongs to the bacterial ribosomal protein bS16 family. | 0.912 |
PEPE_1640 | PEPE_1641 | PEPE_1640 | PEPE_1641 | Galactoside O-acetyltransferase. | Uncharacterized NAD(FAD)-dependent dehydrogenase. | 0.757 |
PEPE_1640 | PEPE_1642 | PEPE_1640 | PEPE_1642 | Galactoside O-acetyltransferase. | C-di-GMP-specific phosphodiesterase. | 0.505 |
PEPE_1641 | PEPE_0937 | PEPE_1641 | PEPE_0937 | Uncharacterized NAD(FAD)-dependent dehydrogenase. | Glycine/D-amino acid oxidase (deaminating). | 0.633 |
PEPE_1641 | PEPE_1614 | PEPE_1641 | PEPE_1614 | Uncharacterized NAD(FAD)-dependent dehydrogenase. | Phospholipid-binding protein. | 0.488 |
PEPE_1641 | PEPE_1640 | PEPE_1641 | PEPE_1640 | Uncharacterized NAD(FAD)-dependent dehydrogenase. | Galactoside O-acetyltransferase. | 0.757 |
PEPE_1641 | PEPE_1642 | PEPE_1641 | PEPE_1642 | Uncharacterized NAD(FAD)-dependent dehydrogenase. | C-di-GMP-specific phosphodiesterase. | 0.601 |
PEPE_1641 | atpA | PEPE_1641 | PEPE_1319 | Uncharacterized NAD(FAD)-dependent dehydrogenase. | ATP synthase F1 subcomplex alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. | 0.444 |
PEPE_1641 | atpD | PEPE_1641 | PEPE_1317 | Uncharacterized NAD(FAD)-dependent dehydrogenase. | ATP synthase F1 subcomplex beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family. | 0.454 |
PEPE_1641 | rpmB | PEPE_1641 | PEPE_0836 | Uncharacterized NAD(FAD)-dependent dehydrogenase. | LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family. | 0.439 |
PEPE_1641 | rpmJ | PEPE_1641 | PEPE_1395 | Uncharacterized NAD(FAD)-dependent dehydrogenase. | LSU ribosomal protein L36P; Belongs to the bacterial ribosomal protein bL36 family. | 0.497 |
PEPE_1641 | rpsE | PEPE_1641 | PEPE_1401 | Uncharacterized NAD(FAD)-dependent dehydrogenase. | SSU ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family. | 0.444 |
PEPE_1641 | rpsP | PEPE_1641 | PEPE_0847 | Uncharacterized NAD(FAD)-dependent dehydrogenase. | SSU ribosomal protein S16P; Belongs to the bacterial ribosomal protein bS16 family. | 0.449 |
PEPE_1642 | PEPE_1640 | PEPE_1642 | PEPE_1640 | C-di-GMP-specific phosphodiesterase. | Galactoside O-acetyltransferase. | 0.505 |
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