NBR_LOCUS2640 protein (Nippostrongylus brasiliensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NBR_LOCUS2640

Uncharacterized protein. (154 aa)

Predicted Functional Partners:

NBR_LOCUS3699

0.876

NBR_LOCUS4990

0.873

NBR_LOCUS21254

0.814

NBR_LOCUS3209

0.795

NBR_LOCUS4628

0.776

NBR_LOCUS19357

0.755

NBR_LOCUS4441

0.751

NBR_LOCUS3471

0.730

NBR_LOCUS10418

0.725

NBR_LOCUS17389

0.714

Your Current Organism:

Nippostrongylus brasiliensis

NCBI taxonomy Id: 27835
Other names: N. brasiliensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NBR_LOCUS10418	NBR_LOCUS17389	A0A0N4Y3L9	A0A0N4YK49	Phosphatidylinositide phosphatase SAC1 (inferred by orthology to a human protein).	Cell death protein 6 (inferred by orthology to a C. elegans protein).	0.412
NBR_LOCUS10418	NBR_LOCUS19357	A0A0N4Y3L9	A0A0N4YQ34	Phosphatidylinositide phosphatase SAC1 (inferred by orthology to a human protein).	DH domain-containing protein.	0.550
NBR_LOCUS10418	NBR_LOCUS21254	A0A0N4Y3L9	A0A0N4YVI1	Phosphatidylinositide phosphatase SAC1 (inferred by orthology to a human protein).	Low-density lipoprotein receptor-related protein (inferred by orthology to a C. elegans protein).	0.725
NBR_LOCUS10418	NBR_LOCUS2640	A0A0N4Y3L9	A0A0N4XJD7	Phosphatidylinositide phosphatase SAC1 (inferred by orthology to a human protein).	Uncharacterized protein.	0.725
NBR_LOCUS10418	NBR_LOCUS3209	A0A0N4Y3L9	A0A0N4XL06	Phosphatidylinositide phosphatase SAC1 (inferred by orthology to a human protein).	Low-density lipoprotein receptor-related protein (inferred by orthology to a C. elegans protein).	0.725
NBR_LOCUS10418	NBR_LOCUS3471	A0A0N4Y3L9	A0A0N4XLR9	Phosphatidylinositide phosphatase SAC1 (inferred by orthology to a human protein).	LDLRAD3 protein (inferred by orthology to a human protein).	0.725
NBR_LOCUS10418	NBR_LOCUS3699	A0A0N4Y3L9	A0A0N4XME5	Phosphatidylinositide phosphatase SAC1 (inferred by orthology to a human protein).	Uncharacterized protein.	0.725
NBR_LOCUS10418	NBR_LOCUS4441	A0A0N4Y3L9	A0A0N4XPI8	Phosphatidylinositide phosphatase SAC1 (inferred by orthology to a human protein).	Low-density lipoprotein receptor-related protein (inferred by orthology to a C. elegans protein).	0.725
NBR_LOCUS10418	NBR_LOCUS4628	A0A0N4Y3L9	A0A0N4XQ23	Phosphatidylinositide phosphatase SAC1 (inferred by orthology to a human protein).	Sortilin-related receptor (inferred by orthology to a human protein).	0.725
NBR_LOCUS10418	NBR_LOCUS4990	A0A0N4Y3L9	A0A0N4XR37	Phosphatidylinositide phosphatase SAC1 (inferred by orthology to a human protein).	Sortilin-related receptor (inferred by orthology to a human protein).	0.725
NBR_LOCUS17389	NBR_LOCUS10418	A0A0N4YK49	A0A0N4Y3L9	Cell death protein 6 (inferred by orthology to a C. elegans protein).	Phosphatidylinositide phosphatase SAC1 (inferred by orthology to a human protein).	0.412
NBR_LOCUS17389	NBR_LOCUS19357	A0A0N4YK49	A0A0N4YQ34	Cell death protein 6 (inferred by orthology to a C. elegans protein).	DH domain-containing protein.	0.928
NBR_LOCUS17389	NBR_LOCUS21254	A0A0N4YK49	A0A0N4YVI1	Cell death protein 6 (inferred by orthology to a C. elegans protein).	Low-density lipoprotein receptor-related protein (inferred by orthology to a C. elegans protein).	0.714
NBR_LOCUS17389	NBR_LOCUS2640	A0A0N4YK49	A0A0N4XJD7	Cell death protein 6 (inferred by orthology to a C. elegans protein).	Uncharacterized protein.	0.714
NBR_LOCUS17389	NBR_LOCUS3209	A0A0N4YK49	A0A0N4XL06	Cell death protein 6 (inferred by orthology to a C. elegans protein).	Low-density lipoprotein receptor-related protein (inferred by orthology to a C. elegans protein).	0.714
NBR_LOCUS17389	NBR_LOCUS3471	A0A0N4YK49	A0A0N4XLR9	Cell death protein 6 (inferred by orthology to a C. elegans protein).	LDLRAD3 protein (inferred by orthology to a human protein).	0.714
NBR_LOCUS17389	NBR_LOCUS3699	A0A0N4YK49	A0A0N4XME5	Cell death protein 6 (inferred by orthology to a C. elegans protein).	Uncharacterized protein.	0.714
NBR_LOCUS17389	NBR_LOCUS4441	A0A0N4YK49	A0A0N4XPI8	Cell death protein 6 (inferred by orthology to a C. elegans protein).	Low-density lipoprotein receptor-related protein (inferred by orthology to a C. elegans protein).	0.714
NBR_LOCUS17389	NBR_LOCUS4628	A0A0N4YK49	A0A0N4XQ23	Cell death protein 6 (inferred by orthology to a C. elegans protein).	Sortilin-related receptor (inferred by orthology to a human protein).	0.714
NBR_LOCUS17389	NBR_LOCUS4990	A0A0N4YK49	A0A0N4XR37	Cell death protein 6 (inferred by orthology to a C. elegans protein).	Sortilin-related receptor (inferred by orthology to a human protein).	0.714