STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NBR_LOCUS6605Uncharacterized protein. (299 aa)    
Predicted Functional Partners:
NBR_LOCUS9067
Matrix metalloproteinase (inferred by orthology to a C. elegans protein).
    
 0.699
NBR_LOCUS6427
Peptidase_M10 domain-containing protein.
    
 0.659
NBR_LOCUS12741
Procollagen-lysine,2-oxoglutarate 5-dioxygenase (inferred by orthology to a C. elegans protein).
   
 0.602
NBR_LOCUS4645
Uncharacterized protein.
    
 0.596
NBR_LOCUS15616
MMP-like protein (inferred by orthology to a C. elegans protein).
   
 0.588
NBR_LOCUS19679
MMP-like protein (inferred by orthology to a C. elegans protein).
   
 0.588
NBR_LOCUS9054
Matrix metalloproteinase (inferred by orthology to a C. elegans protein).
   
 0.588
NBR_LOCUS13292
Matrilysin (inferred by orthology to a human protein); Belongs to the peptidase M10A family.
   
 0.588
NBR_LOCUS10482
Uncharacterized protein.
     
 0.565
NBR_LOCUS14117
Uncharacterized protein.
     
 0.565
Your Current Organism:
Nippostrongylus brasiliensis
NCBI taxonomy Id: 27835
Other names: N. brasiliensis
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