A0A4Z1JHW8 protein (Botrytis elliptica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A4Z1JHW8

Uncharacterized protein. (846 aa)

Predicted Functional Partners:

A0A4Z1JLI3

0.626

A0A4Z1JIB9

0.567

A0A4Z1JKU9

0.564

A0A4Z1JNZ6

0.561

A0A4Z1JBQ1

0.533

A0A4Z1JGP1

0.528

A0A4Z1JZQ6

0.520

A0A4Z1K2X1

0.520

A0A4Z1J3L8

0.515

A0A4Z1JL41

0.513

Your Current Organism:

Botrytis elliptica

NCBI taxonomy Id: 278938
Other names: B. elliptica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A4Z1J3L8	A0A4Z1JHW8	Uncharacterized protein.	Uncharacterized protein.	0.515
A0A4Z1J3L8	A0A4Z1JZQ6	Uncharacterized protein.	DNA ligase.	0.405
A0A4Z1J3L8	A0A4Z1K2X1	Uncharacterized protein.	DNA ligase.	0.405
A0A4Z1JBQ1	A0A4Z1JGP1	Protein kinase domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.540
A0A4Z1JBQ1	A0A4Z1JHW8	Protein kinase domain-containing protein.	Uncharacterized protein.	0.533
A0A4Z1JBQ1	A0A4Z1JKU9	Protein kinase domain-containing protein.	P/Homo B domain-containing protein.	0.586
A0A4Z1JBQ1	A0A4Z1JLI3	Protein kinase domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.950
A0A4Z1JGP1	A0A4Z1JBQ1	WD_REPEATS_REGION domain-containing protein.	Protein kinase domain-containing protein.	0.540
A0A4Z1JGP1	A0A4Z1JHW8	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.528
A0A4Z1JGP1	A0A4Z1JLI3	WD_REPEATS_REGION domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.535
A0A4Z1JHW8	A0A4Z1J3L8	Uncharacterized protein.	Uncharacterized protein.	0.515
A0A4Z1JHW8	A0A4Z1JBQ1	Uncharacterized protein.	Protein kinase domain-containing protein.	0.533
A0A4Z1JHW8	A0A4Z1JGP1	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.528
A0A4Z1JHW8	A0A4Z1JIB9	Uncharacterized protein.	Uncharacterized protein; Belongs to the nucleosome assembly protein (NAP) family.	0.567
A0A4Z1JHW8	A0A4Z1JKU9	Uncharacterized protein.	P/Homo B domain-containing protein.	0.564
A0A4Z1JHW8	A0A4Z1JL41	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.513
A0A4Z1JHW8	A0A4Z1JLI3	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.626
A0A4Z1JHW8	A0A4Z1JNZ6	Uncharacterized protein.	Protein disulfide-isomerase.	0.561
A0A4Z1JHW8	A0A4Z1JZQ6	Uncharacterized protein.	DNA ligase.	0.520
A0A4Z1JHW8	A0A4Z1K2X1	Uncharacterized protein.	DNA ligase.	0.520