A0A4Z1K006 protein (Botrytis elliptica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A4Z1K006

UBX domain-containing protein. (463 aa)

Predicted Functional Partners:

A0A4Z1JRN2

0.940

A0A4Z1JMI1

0.939

A0A4Z1K2F4

0.898

A0A4Z1K8T1

0.880

A0A4Z1JAR1

0.863

A0A4Z1JJQ3

0.863

A0A4Z1K028

0.862

A0A4Z1K5T9

0.846

A0A4Z1JK29

0.828

A0A4Z1JMR4

0.773

Your Current Organism:

Botrytis elliptica

NCBI taxonomy Id: 278938
Other names: B. elliptica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A4Z1JAR1	A0A4Z1JK29	Uncharacterized protein; Belongs to the AAA ATPase family.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.953
A0A4Z1JAR1	A0A4Z1JMI1	Uncharacterized protein; Belongs to the AAA ATPase family.	UBX domain-containing protein.	0.877
A0A4Z1JAR1	A0A4Z1JRN2	Uncharacterized protein; Belongs to the AAA ATPase family.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.957
A0A4Z1JAR1	A0A4Z1K006	Uncharacterized protein; Belongs to the AAA ATPase family.	UBX domain-containing protein.	0.863
A0A4Z1JAR1	A0A4Z1K028	Uncharacterized protein; Belongs to the AAA ATPase family.	TUG-UBL1 domain-containing protein.	0.893
A0A4Z1JAR1	A0A4Z1K2F4	Uncharacterized protein; Belongs to the AAA ATPase family.	UBX domain-containing protein.	0.940
A0A4Z1JAR1	A0A4Z1K8T1	Uncharacterized protein; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.989
A0A4Z1JJQ3	A0A4Z1JK29	Uncharacterized protein.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.953
A0A4Z1JJQ3	A0A4Z1JMI1	Uncharacterized protein.	UBX domain-containing protein.	0.877
A0A4Z1JJQ3	A0A4Z1JRN2	Uncharacterized protein.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.957
A0A4Z1JJQ3	A0A4Z1K006	Uncharacterized protein.	UBX domain-containing protein.	0.863
A0A4Z1JJQ3	A0A4Z1K028	Uncharacterized protein.	TUG-UBL1 domain-containing protein.	0.893
A0A4Z1JJQ3	A0A4Z1K2F4	Uncharacterized protein.	UBX domain-containing protein.	0.940
A0A4Z1JJQ3	A0A4Z1K8T1	Uncharacterized protein.	Uncharacterized protein.	0.972
A0A4Z1JK29	A0A4Z1JAR1	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.953
A0A4Z1JK29	A0A4Z1JJQ3	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	Uncharacterized protein.	0.953
A0A4Z1JK29	A0A4Z1JMI1	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	UBX domain-containing protein.	0.833
A0A4Z1JK29	A0A4Z1JMR4	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	Uncharacterized protein.	0.929
A0A4Z1JK29	A0A4Z1JRN2	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.968
A0A4Z1JK29	A0A4Z1K006	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	UBX domain-containing protein.	0.828