Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
msrA | msrB | BL01421 | BL01422 | Peptidyl methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | Conserved protein MsrB. | 0.999 |
msrB | msrA | BL01422 | BL01421 | Conserved protein MsrB. | Peptidyl methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.999 |
msrB | rplK | BL01422 | BL05008 | Conserved protein MsrB. | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.686 |
msrB | rplL | BL01422 | BL02800 | Conserved protein MsrB. | Ribosomal protein L12 (BL9); Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | 0.686 |
msrB | rplQ | BL01422 | BL01024 | Conserved protein MsrB. | Ribosomal protein L17 (BL15). | 0.686 |
msrB | rplT | BL01422 | BL00356 | Conserved protein MsrB. | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.753 |
msrB | rplU | BL01422 | BL04043 | Conserved protein MsrB. | Ribosomal protein L21 (BL20); This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.686 |
msrB | rpmA | BL01422 | BL01160 | Conserved protein MsrB. | Ribosomal protein L27 (BL24); Belongs to the bacterial ribosomal protein bL27 family. | 0.686 |
msrB | rpmB | BL01422 | BL02327 | Conserved protein MsrB. | Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.686 |
msrB | rpsI | BL01422 | BL01018 | Conserved protein MsrB. | Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.686 |
msrB | rpsP | BL01422 | BL02323 | Conserved protein MsrB. | Ribosomal protein S16 (BS17); Belongs to the bacterial ribosomal protein bS16 family. | 0.686 |
rplK | msrB | BL05008 | BL01422 | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | Conserved protein MsrB. | 0.686 |
rplK | rplL | BL05008 | BL02800 | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | Ribosomal protein L12 (BL9); Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | 0.999 |
rplK | rplQ | BL05008 | BL01024 | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | Ribosomal protein L17 (BL15). | 0.998 |
rplK | rplT | BL05008 | BL00356 | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.998 |
rplK | rplU | BL05008 | BL04043 | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | Ribosomal protein L21 (BL20); This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.997 |
rplK | rpmA | BL05008 | BL01160 | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | Ribosomal protein L27 (BL24); Belongs to the bacterial ribosomal protein bL27 family. | 0.995 |
rplK | rpmB | BL05008 | BL02327 | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.993 |
rplK | rpsI | BL05008 | BL01018 | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.998 |
rplK | rpsP | BL05008 | BL02323 | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | Ribosomal protein S16 (BS17); Belongs to the bacterial ribosomal protein bS16 family. | 0.997 |
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