Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ahrC | arcA | BL01521 | BL01912 | Transcriptional regulator; Regulates arginine biosynthesis genes and activates arginine deiminase pathway genes; Belongs to the ArgR family. | Arginine deiminase. | 0.501 |
ahrC | arcB | BL01521 | BL01914 | Transcriptional regulator; Regulates arginine biosynthesis genes and activates arginine deiminase pathway genes; Belongs to the ArgR family. | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family. | 0.805 |
ahrC | arcC | BL01521 | BL01916 | Transcriptional regulator; Regulates arginine biosynthesis genes and activates arginine deiminase pathway genes; Belongs to the ArgR family. | Carbamate kinase. | 0.527 |
ahrC | argF | BL01521 | BL03247 | Transcriptional regulator; Regulates arginine biosynthesis genes and activates arginine deiminase pathway genes; Belongs to the ArgR family. | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family. | 0.676 |
ahrC | argJ | BL01521 | BL03242 | Transcriptional regulator; Regulates arginine biosynthesis genes and activates arginine deiminase pathway genes; Belongs to the ArgR family. | Ornithine acetyltransferase and amino-acid acetyltransferase; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family. | 0.812 |
arcA | ahrC | BL01912 | BL01521 | Arginine deiminase. | Transcriptional regulator; Regulates arginine biosynthesis genes and activates arginine deiminase pathway genes; Belongs to the ArgR family. | 0.501 |
arcA | arcB | BL01912 | BL01914 | Arginine deiminase. | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family. | 0.997 |
arcA | arcC | BL01912 | BL01916 | Arginine deiminase. | Carbamate kinase. | 0.989 |
arcA | arcD | BL01912 | BL01915 | Arginine deiminase. | Amino acid/polyamine transporter permease. | 0.896 |
arcA | arcR | BL01912 | BL01917 | Arginine deiminase. | Transcriptional regulator Fnr family protein. | 0.826 |
arcA | argF | BL01912 | BL03247 | Arginine deiminase. | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family. | 0.956 |
arcA | argJ | BL01912 | BL03242 | Arginine deiminase. | Ornithine acetyltransferase and amino-acid acetyltransferase; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family. | 0.507 |
arcA | argR | BL01912 | BL01911 | Arginine deiminase. | Transcriptional regulator of arginine metabolism expression; Regulates arginine biosynthesis genes. | 0.696 |
arcB | ahrC | BL01914 | BL01521 | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family. | Transcriptional regulator; Regulates arginine biosynthesis genes and activates arginine deiminase pathway genes; Belongs to the ArgR family. | 0.805 |
arcB | arcA | BL01914 | BL01912 | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family. | Arginine deiminase. | 0.997 |
arcB | arcC | BL01914 | BL01916 | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family. | Carbamate kinase. | 0.995 |
arcB | arcD | BL01914 | BL01915 | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family. | Amino acid/polyamine transporter permease. | 0.774 |
arcB | arcR | BL01914 | BL01917 | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family. | Transcriptional regulator Fnr family protein. | 0.639 |
arcB | argF | BL01914 | BL03247 | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family. | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family. | 0.422 |
arcB | argJ | BL01914 | BL03242 | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family. | Ornithine acetyltransferase and amino-acid acetyltransferase; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family. | 0.975 |
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