STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Saro_0799Amidohydrolase 2. (351 aa)    
Predicted Functional Partners:
Saro_2861
Aminomethyltransferase; Belongs to the GcvT family.
   
 
 0.905
Saro_0800
Major facilitator superfamily MFS_1.
       0.704
Saro_0798
Conserved hypothetical protein.
       0.648
secB
Protein translocase subunit secB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA.
      
 0.556
Saro_0797
Succinate semialdehyde dehydrogenase.
  
  
 0.490
Saro_0714
Conserved hypothetical protein; Belongs to the UPF0255 family.
 
     0.463
Saro_0802
Carotenoid oxygenase.
 
    0.460
Saro_2809
Carotenoid oxygenase.
 
    0.434
Saro_0712
Monooxygenase, FAD-binding protein.
 
  
 0.409
Your Current Organism:
Novosphingobium aromaticivorans
NCBI taxonomy Id: 279238
Other names: N. aromaticivorans DSM 12444, Novosphingobium aromaticivorans DSM 12444, Novosphingobium aromaticivorans str. DSM 12444, Novosphingobium aromaticivorans strain DSM 12444
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