STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Saro_0802Carotenoid oxygenase. (494 aa)    
Predicted Functional Partners:
Saro_0801
Conserved hypothetical protein; Belongs to the UPF0311 family.
 
   
 0.818
Saro_1490
FAD linked oxidase-like protein.
 
     0.634
Saro_2505
Hypothetical protein.
  
     0.590
Saro_1492
Vanillyl-alcohol oxidase.
 
     0.589
Saro_2876
FAD linked oxidase-like protein.
 
     0.585
Saro_2404
Aminomethyltransferase; Belongs to the GcvT family.
   
  
 0.560
Saro_0803
Transcriptional regulator, MarR family.
       0.555
Saro_0282
acyl-CoA dehydrogenase-like protein.
  
    0.548
Saro_2502
Conserved hypothetical protein.
  
     0.503
Saro_1652
Twin-arginine translocation pathway signal.
 
     0.481
Your Current Organism:
Novosphingobium aromaticivorans
NCBI taxonomy Id: 279238
Other names: N. aromaticivorans DSM 12444, Novosphingobium aromaticivorans DSM 12444, Novosphingobium aromaticivorans str. DSM 12444, Novosphingobium aromaticivorans strain DSM 12444
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.