Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Saro_0036 | Saro_0852 | Histidine kinase. | Methyl-accepting chemotaxis sensory transducer. | 0.668 |
Saro_0036 | Saro_1106 | Histidine kinase. | Periplasmic sensor diguanylate cyclase/phosphodiesterase. | 0.640 |
Saro_0036 | Saro_1231 | Histidine kinase. | Transcriptional regulator, LuxR family. | 0.997 |
Saro_0036 | Saro_1403 | Histidine kinase. | Diguanylate cyclase/phosphodiesterase. | 0.884 |
Saro_0036 | Saro_1983 | Histidine kinase. | Diguanylate cyclase/phosphodiesterase. | 0.868 |
Saro_0036 | Saro_2326 | Histidine kinase. | Diguanylate phosphodiesterase. | 0.692 |
Saro_0036 | Saro_2361 | Histidine kinase. | Flagellin-like protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | 0.564 |
Saro_0036 | Saro_2481 | Histidine kinase. | Diguanylate cyclase. | 0.704 |
Saro_0036 | Saro_2627 | Histidine kinase. | Multi-sensor hybrid histidine kinase. | 0.984 |
Saro_0036 | Saro_3074 | Histidine kinase. | RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG; Belongs to the sigma-70 factor family. | 0.575 |
Saro_0852 | Saro_0036 | Methyl-accepting chemotaxis sensory transducer. | Histidine kinase. | 0.668 |
Saro_0852 | Saro_1106 | Methyl-accepting chemotaxis sensory transducer. | Periplasmic sensor diguanylate cyclase/phosphodiesterase. | 0.576 |
Saro_0852 | Saro_1231 | Methyl-accepting chemotaxis sensory transducer. | Transcriptional regulator, LuxR family. | 0.617 |
Saro_0852 | Saro_1403 | Methyl-accepting chemotaxis sensory transducer. | Diguanylate cyclase/phosphodiesterase. | 0.608 |
Saro_0852 | Saro_1983 | Methyl-accepting chemotaxis sensory transducer. | Diguanylate cyclase/phosphodiesterase. | 0.575 |
Saro_0852 | Saro_2326 | Methyl-accepting chemotaxis sensory transducer. | Diguanylate phosphodiesterase. | 0.580 |
Saro_0852 | Saro_2361 | Methyl-accepting chemotaxis sensory transducer. | Flagellin-like protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | 0.846 |
Saro_0852 | Saro_2481 | Methyl-accepting chemotaxis sensory transducer. | Diguanylate cyclase. | 0.595 |
Saro_0852 | Saro_2627 | Methyl-accepting chemotaxis sensory transducer. | Multi-sensor hybrid histidine kinase. | 0.596 |
Saro_0852 | Saro_3074 | Methyl-accepting chemotaxis sensory transducer. | RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG; Belongs to the sigma-70 factor family. | 0.799 |
page 1 of 6