STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Saro_0958Protein-disulfide isomerase. (238 aa)    
Predicted Functional Partners:
Saro_0959
Protein of unknown function DUF1159.
 
     0.885
Saro_0962
NUDIX hydrolase.
       0.697
Saro_0960
A/G-specific DNA-adenine glycosylase; Adenine glycosylase active on G-A mispairs.
       0.681
Saro_2791
Cytochrome c biogenesis protein, transmembrane region.
  
 
 0.674
Saro_1997
UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily.
 
     0.614
Saro_0963
DSBA oxidoreductase.
  
  
 0.612
Saro_1998
Helicase.
 
     0.612
Saro_2389
Cobaltochelatase CobT subunit.
  
     0.590
Saro_2491
Protein of unknown function DUF448.
  
     0.587
Saro_1005
Protein of unknown function DUF1321.
  
     0.585
Your Current Organism:
Novosphingobium aromaticivorans
NCBI taxonomy Id: 279238
Other names: N. aromaticivorans DSM 12444, Novosphingobium aromaticivorans DSM 12444, Novosphingobium aromaticivorans str. DSM 12444, Novosphingobium aromaticivorans strain DSM 12444
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