STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Saro_1588Major facilitator superfamily MFS_1. (410 aa)    
Predicted Functional Partners:
Saro_1589
TonB-dependent receptor.
       0.625
Saro_0160
General substrate transporter.
  
   
 0.606
aroE-2
Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
 
    0.586
Saro_1587
Transcriptional regulator, TetR family.
       0.532
Saro_2097
General substrate transporter.
  
   
 0.527
Saro_0539
2-chlorobenzoate 1,2-dioxygenase.
 
  
 0.474
Saro_0538
Benzoate 1,2-dioxygenase, alpha subunit.
  
     0.466
Saro_1680
Ring hydroxylating dioxygenase, alpha subunit.
  
     0.445
Saro_1681
Aromatic-ring-hydroxylating dioxygenase, beta subunit.
  
  
 0.419
Saro_0540
Short-chain dehydrogenase/reductase SDR.
  
     0.407
Your Current Organism:
Novosphingobium aromaticivorans
NCBI taxonomy Id: 279238
Other names: N. aromaticivorans DSM 12444, Novosphingobium aromaticivorans DSM 12444, Novosphingobium aromaticivorans str. DSM 12444, Novosphingobium aromaticivorans strain DSM 12444
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