STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Saro_1595Polysaccharide deacetylase. (1101 aa)    
Predicted Functional Partners:
Saro_1597
Protein of unknown function DUF470.
  
  
 0.867
Saro_1596
Type IV secretory pathway VirJ component-like protein.
 
     0.826
Saro_1598
Conserved hypothetical protein.
       0.773
Saro_2118
TPR repeat protein.
  
 
 0.772
Saro_0723
Hypothetical protein.
  
 
 0.771
Saro_0724
Glycosyl transferase, family 2.
  
 
 0.771
Saro_2046
TPR repeat protein.
  
 
 0.753
Saro_2663
Dolichyl-phosphate beta-D-mannosyltransferase.
 
 
 0.743
Saro_0750
Glycosyl transferase, group 1.
  
 
 0.742
Saro_1764
Putative integral membrane sensor protein.
  
  
 0.740
Your Current Organism:
Novosphingobium aromaticivorans
NCBI taxonomy Id: 279238
Other names: N. aromaticivorans DSM 12444, Novosphingobium aromaticivorans DSM 12444, Novosphingobium aromaticivorans str. DSM 12444, Novosphingobium aromaticivorans strain DSM 12444
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