Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Saro_1178 | Saro_1850 | Saro_1178 | Saro_1850 | Dihydrolipoamide dehydrogenase. | Aminomethyltransferase. | 0.946 |
Saro_1178 | Saro_1853 | Saro_1178 | Saro_1853 | Dihydrolipoamide dehydrogenase. | Glycine dehydrogenase (decarboxylating) beta subunit. | 0.937 |
Saro_1178 | Saro_1945 | Saro_1178 | Saro_1945 | Dihydrolipoamide dehydrogenase. | Dihydrolipoamide dehydrogenase. | 0.912 |
Saro_1178 | gcvH | Saro_1178 | Saro_1851 | Dihydrolipoamide dehydrogenase. | Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. | 0.969 |
Saro_1178 | gcvPA | Saro_1178 | Saro_1852 | Dihydrolipoamide dehydrogenase. | Glycine dehydrogenase (decarboxylating) alpha subunit; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein. | 0.937 |
Saro_1178 | glyA | Saro_1178 | Saro_2240 | Dihydrolipoamide dehydrogenase. | Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.918 |
Saro_1797 | Saro_1853 | Saro_1797 | Saro_1853 | 5-aminolevulinate synthase. | Glycine dehydrogenase (decarboxylating) beta subunit. | 0.911 |
Saro_1797 | Saro_2939 | Saro_1797 | Saro_2939 | 5-aminolevulinate synthase. | FAD dependent oxidoreductase. | 0.904 |
Saro_1797 | Saro_3111 | Saro_1797 | Saro_3111 | 5-aminolevulinate synthase. | Serine palmitoyltransferase. | 0.923 |
Saro_1797 | Saro_3267 | Saro_1797 | Saro_3267 | 5-aminolevulinate synthase. | L-threonine aldolase. | 0.908 |
Saro_1797 | gcvPA | Saro_1797 | Saro_1852 | 5-aminolevulinate synthase. | Glycine dehydrogenase (decarboxylating) alpha subunit; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein. | 0.909 |
Saro_1797 | glyA | Saro_1797 | Saro_2240 | 5-aminolevulinate synthase. | Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.913 |
Saro_1850 | Saro_1178 | Saro_1850 | Saro_1178 | Aminomethyltransferase. | Dihydrolipoamide dehydrogenase. | 0.946 |
Saro_1850 | Saro_1853 | Saro_1850 | Saro_1853 | Aminomethyltransferase. | Glycine dehydrogenase (decarboxylating) beta subunit. | 0.999 |
Saro_1850 | Saro_1945 | Saro_1850 | Saro_1945 | Aminomethyltransferase. | Dihydrolipoamide dehydrogenase. | 0.943 |
Saro_1850 | Saro_2939 | Saro_1850 | Saro_2939 | Aminomethyltransferase. | FAD dependent oxidoreductase. | 0.703 |
Saro_1850 | gcvH | Saro_1850 | Saro_1851 | Aminomethyltransferase. | Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. | 0.999 |
Saro_1850 | gcvPA | Saro_1850 | Saro_1852 | Aminomethyltransferase. | Glycine dehydrogenase (decarboxylating) alpha subunit; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein. | 0.999 |
Saro_1850 | glyA | Saro_1850 | Saro_2240 | Aminomethyltransferase. | Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.995 |
Saro_1853 | Saro_1178 | Saro_1853 | Saro_1178 | Glycine dehydrogenase (decarboxylating) beta subunit. | Dihydrolipoamide dehydrogenase. | 0.937 |
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