STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Saro_2118TPR repeat protein. (504 aa)    
Predicted Functional Partners:
Saro_2046
TPR repeat protein.
 
 
 0.886
Saro_1595
Polysaccharide deacetylase.
  
 
 0.772
Saro_0299
Hypothetical protein.
  
 
 0.729
Saro_2328
Hypothetical protein.
 
 
   0.714
Saro_2335
Lipopolysaccharide biosynthesis.
 
     0.698
Saro_3219
Peptidase M48, Ste24p.
  
 
 0.682
Saro_3179
O-antigen polymerase.
 
  
 0.677
Saro_1764
Putative integral membrane sensor protein.
   
 
 0.671
Saro_2336
Polysaccharide export protein.
 
 
 0.657
Saro_2644
Bacteriophage N4 adsorption protein B.
  
 
 0.656
Your Current Organism:
Novosphingobium aromaticivorans
NCBI taxonomy Id: 279238
Other names: N. aromaticivorans DSM 12444, Novosphingobium aromaticivorans DSM 12444, Novosphingobium aromaticivorans str. DSM 12444, Novosphingobium aromaticivorans strain DSM 12444
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.