STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fbpBMycolyl transferase 85B. (263 aa)    
Predicted Functional Partners:
xynZ_1
Endo-1%2C4-beta-xylanase Z precursor.
 
    
0.833
gltD_3
Glutamate synthase [NADPH] small chain.
  
 
  0.803
xynZ_2
Endo-1%2C4-beta-xylanase Z precursor.
 
  
  0.720
csoR
Copper-sensitive operon repressor.
  
  
 0.662
nylB
6-aminohexanoate-dimer hydrolase.
   
 0.638
CUQ74227.1
Prolyl oligopeptidase family.
 
  
 0.539
CUQ74868.1
Acetyl esterase.
 
  
 0.536
rhgT_2
Rhamnogalacturonan acetylesterase rhgT.
 
  
 0.523
CUQ76189.1
DUF based on E. rectale Gene description.
    
 0.504
ydfH_1
Uncharacterized HTH-type transcriptional regulator ydfH.
       0.478
Your Current Organism:
Lachnospira pectinoschiza
NCBI taxonomy Id: 28052
Other names: ATCC 49827, L. pectinoschiza, strain 150-1
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