STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OOV06082.1CrtD protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (512 aa)    
Predicted Functional Partners:
OOV06081.1
Carotenoid 1,2-hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.994
OOV06077.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.979
OOV05668.1
Squalene synthase HpnD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.958
OOV06093.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.944
OOV06085.1
Photosynthetic reaction center subunit M; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.
 
  
 0.877
OOV06083.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.875
OOV06086.1
Photosynthetic reaction center subunit L; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the reaction center PufL/M/PsbA/D family.
 
  
 0.860
OOV06084.1
Photosynthetic reaction center cytochrome C subunit; The reaction center of purple bacteria contains a tightly bound cytochrome molecule which re-reduces the photo oxidized primary electron donor.
 
  
 0.855
OOV06058.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.853
OOV05667.1
Squalene synthase HpnC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.833
Your Current Organism:
Rhodoferax fermentans
NCBI taxonomy Id: 28066
Other names: ATCC 49787, DSM 10138, IFO 16659, JCM 7819, NBRC 16659, R. fermentans, strain FR2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.