STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
intS_5Phage integrase; Belongs to the 'phage' integrase family. (409 aa)    
Predicted Functional Partners:
Lcin_1190
Hypothetical protein.
 
     0.803
intS_2
Integrase; Belongs to the 'phage' integrase family.
  
     0.773
intS_6
Integrase; Belongs to the 'phage' integrase family.
  
     0.702
putA
Bifunctional PutA protein (proline dehydrogenase/ delta-1-pyrroline-5-carboxylate dehydrogenase); Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
     
  0.542
Lcin_2711
Inner membrane protein.
  
     0.475
Lcin_2079
Inner membrane protein.
  
     0.471
Lcin_1457
Inner membrane protein.
 
     0.458
Lcin_1271
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
     
  0.456
Lcin_0957
Ankyrin repeat protein.
  
     0.445
traI_3
Putative conjugative transfer protein TraI.
  
     0.445
Your Current Organism:
Legionella cincinnatiensis
NCBI taxonomy Id: 28085
Other names: ATCC 43753, CCUG 31230 A, CIP 103875, DSM 19233, L. cincinnatiensis, NCTC 12438, strain 72-OH-H
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