STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF70908.1Cobalt-zinc-cadmium efflux system protein. (343 aa)    
Predicted Functional Partners:
SME99787.1
Pimeloyl-ACP methyl ester carboxylesterase.
 
      0.899
SMF03354.1
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD.
  
    0.698
SMF18321.1
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD.
  
    0.698
SMF40459.1
Ca2+-transporting ATPase.
    
 0.658
SMF10011.1
Hypothetical protein.
  
    0.602
SMF70901.1
Inclusion body protein.
       0.526
SMF65899.1
Cytochrome c biogenesis protein CcdA.
    
 0.505
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
  
 0.491
SMF14345.1
Dihydrolipoamide dehydrogenase.
   
  
 0.464
SMF06033.1
ATPase, P-type (transporting), HAD superfamily, subfamily IC/heavy metal translocating P-type ATPase.
  
  
 0.452
Your Current Organism:
Trinickia caryophylli
NCBI taxonomy Id: 28094
Other names: ATCC 25418, Burkholderia caryophylli, CCUG 20834, CFBP 2429, CFBP 3818, CIP 105770, DSM 50341, HAMBI 2159, ICMP 512, JCM 10488, JCM 9310, LMG 2155, LMG:2155, NCPPB 2151, Paraburkholderia caryophylli, Phytomonas caryophylli, Pseudomonas caryophylli, Pseudomonas caryophyllii, T. caryophylli
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