STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lxx05110Conserved hypothetical protein; Identified by sequence similarity. (257 aa)    
Predicted Functional Partners:
rmlA
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
  
 0.952
udgA
UDP-glucose 6-dehydrogenase; Identified by sequence similarity.
  
  
 0.949
rmlC
dTDP-4-dehydrorhamnose 3,5-epimerase; Identified by sequence similarity.
  
  
 0.949
wbjB
Polysaccharide biosynthesis protein; Identified by sequence similarity.
  
  
 0.873
wbjD
O-antigen biosynthesis protein; Identified by sequence similarity; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
  
 0.855
bplE
Glycosyltransferase; Identified by sequence similarity.
  
  
 0.838
rfbD
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
  
  
 0.832
tagA
UDP-N-acetyl-D-mannosaminuronic acid transferase; Identified by sequence similarity.
  
  
 0.725
Lxx21790
Hypothetical protein.
  
  
 0.725
cpsC
Capsular polysaccharide biosynthesis protein; Identified by sequence similarity.
  
  
 0.667
Your Current Organism:
Leifsonia xyli CTCB07
NCBI taxonomy Id: 281090
Other names: L. xyli subsp. xyli str. CTCB07, Leifsonia xyli subsp. xyli CTCB07, Leifsonia xyli subsp. xyli str. CTCB07, Leifsonia xyli subsp. xyli strain CTCB07
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.