STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lxx10170Conserved hypothetical protein; Identified by sequence similarity. (309 aa)    
Predicted Functional Partners:
Lxx10180
Major facilitator superfamily permease; Identified by sequence similarity.
       0.696
Lxx15500
Conserved hypothetical protein; Identified by sequence similarity.
  
     0.623
pep
Aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.
       0.608
Lxx22620
Conserved hypothetical protein; Identified by sequence similarity.
   
    0.523
cobQ
Cobyric acid synthase; Identified by sequence similarity.
 
     0.465
Lxx08300
Conserved hypothetical protein; Identified by sequence similarity.
  
     0.449
serC
Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine.
  
     0.449
murC
UDP-N-acetylmuramyl tripeptide synthetase; Identified by sequence similarity.
 
     0.443
hrdB
RNA polymerase, sigma-70 family factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
       0.441
Lxx11270
Mambrane protein; Identified by sequence similarity.
  
     0.431
Your Current Organism:
Leifsonia xyli CTCB07
NCBI taxonomy Id: 281090
Other names: L. xyli subsp. xyli str. CTCB07, Leifsonia xyli subsp. xyli CTCB07, Leifsonia xyli subsp. xyli str. CTCB07, Leifsonia xyli subsp. xyli strain CTCB07
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.